Package: ZIM4rv 0.1.1

Xiaomin Liu

ZIM4rv: Gene‐based Association Tests of Zero‐inflated Count Phenotype for Rare Variants

Gene‐based association tests to model count data with excessive zeros and rare variants using zero-inflated Poisson/zero-inflated negative Binomial regression framework. This method was originally described by Fan, Sun, and Li in Genetic Epidemiology 46(1):73-86 <doi:10.1002/gepi.22438>.

Authors:Xiaomin Liu [aut, cre, cph]

ZIM4rv_0.1.1.tar.gz
ZIM4rv_0.1.1.zip(r-4.7)ZIM4rv_0.1.1.zip(r-4.6)ZIM4rv_0.1.1.zip(r-4.5)
ZIM4rv_0.1.1.tgz(r-4.6-any)ZIM4rv_0.1.1.tgz(r-4.5-any)
ZIM4rv_0.1.1.tar.gz(r-4.7-any)ZIM4rv_0.1.1.tar.gz(r-4.6-any)
ZIM4rv_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ZIM4rv/json (API)

# Install 'ZIM4rv' in R:

install.packages('ZIM4rv', repos = c('https://fanx0037.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/fanx0037/zim4rv/issues

Datasets:

Ex1_genedata - An example dataset of genedata
Ex1_phenodata - An example dataset of phenodata
Ex2_covar - An example dataset of covariate file
Ex2_dosage - An example dataset of dosage file
Ex2_fam - An example dataset of .fam file
Ex2_pheno - An example dataset of pheno file
Ex2_region - An example dataset of genetic region file

On CRAN:

2.70 score 2 scripts 203 downloads 11 exports 14 dependencies

Last updated from:5577ac8459. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	179
source / vignettes	OK	175
linux-release-x86_64	OK	188
macos-release-arm64	OK	119
macos-oldrel-arm64	OK	179
windows-devel	OK	102
windows-release	OK	105
windows-oldrel	OK	100
wasm-release	OK	104

Exports:cauchyp p_burden_single p_kernel_single phi_lambda_hat phi_mu_hat4zinb preprocess_genedata preprocess_phenodata U_fi_lmd U_phi_mu4zinb vuong_test zimfrv

Dependencies:CompQuadForm data.table lattice MASS Matrix plyr pscl Rcpp RcppArmadillo RcppEigen RNOmni RSpectra SKAT SPAtest

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
cauchyp	cauchyp
An example dataset of genedata	Ex1_genedata
An example dataset of phenodata	Ex1_phenodata
An example dataset of covariate file	Ex2_covar
An example dataset of dosage file	Ex2_dosage
An example dataset of .fam file	Ex2_fam
An example dataset of pheno file	Ex2_pheno
An example dataset of genetic region file	Ex2_region
p_burden_single	p_burden_single
p_kernel_single	p_kernel_single
phi_lambda_hat	phi_lambda_hat
phi_mu_hat4zinb	phi_mu_hat4zinb
preprocess_genedata	preprocess_genedata
preprocess_phenodata	preprocess_phenodata
U_fi_lmd	U_fi_lmd
U_phi_mu4zinb	U_phi_mu4zinb
vuong_test	vuong_test
zimfrv	zimfrv