{
  "_id": "6a573318ff0138dec5d6f068",
  "Package": "ZIM4rv",
  "Type": "Package",
  "Title": "Gene‐based Association Tests of Zero‐inflated Count Phenotype\nfor Rare Variants",
  "Version": "0.1.1",
  "Authors@R": "person(given = \"Xiaomin\",\nfamily = \"Liu\",\nrole = c(\"aut\", \"cre\",\"cph\"),\nemail = \"e0717571@u.nus.edu\")",
  "Maintainer": "Xiaomin Liu <e0717571@u.nus.edu>",
  "Description": "Gene‐based association tests to model count data with\nexcessive zeros and rare variants using zero-inflated\nPoisson/zero-inflated negative Binomial regression framework.\nThis method was originally described by Fan, Sun, and Li in\nGenetic Epidemiology 46(1):73-86 <doi:10.1002/gepi.22438>.",
  "License": "GPL-3",
  "URL": "https://github.com/fanx0037/ZIM4rv",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.3.2",
  "BugReports": "https://github.com/fanx0037/ZIM4rv/issues",
  "Repository": "https://fanx0037.r-universe.dev",
  "Date/Publication": "2024-12-18 13:15:47 UTC",
  "RemoteUrl": "https://github.com/fanx0037/zim4rv",
  "RemoteRef": "HEAD",
  "RemoteSha": "5577ac845990bdc5067546c82c40a8536fc48d31",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-15 07:09:43 UTC",
    "User": "root"
  },
  "Author": "Xiaomin Liu [aut, cre, cph]",
  "_user": "fanx0037",
  "_type": "src",
  "_file": "ZIM4rv_0.1.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/48304d819153b44a8efea31de9161491bcd9f84ee49f1cf6bf4ff3aeb7703045",
  "_filesize": 353513,
  "_sha256": "48304d819153b44a8efea31de9161491bcd9f84ee49f1cf6bf4ff3aeb7703045",
  "_expires": "2026-10-23T07:13:26.000Z",
  "_created": "2026-07-15T07:09:43.000Z",
  "_published": "2026-07-15T07:13:28.224Z",
  "_jobs": [
    {
      "job": 87290949502,
      "time": 179,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8335356676"
    },
    {
      "job": 87290949489,
      "time": 188,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8335359877"
    },
    {
      "job": 87290949485,
      "time": 179,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8335348889"
    },
    {
      "job": 87290949514,
      "time": 119,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8335331049"
    },
    {
      "job": 87290463314,
      "time": 175,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8335294308"
    },
    {
      "job": 87290949486,
      "time": 104,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8335331290"
    },
    {
      "job": 87290949494,
      "time": 102,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8335330971"
    },
    {
      "job": 87290949500,
      "time": 100,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8335330089"
    },
    {
      "job": 87290949508,
      "time": 105,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8335331977"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/fanx0037/actions/runs/29396281846",
  "_status": "success",
  "_upstream": "https://github.com/fanx0037/zim4rv",
  "_commit": {
    "id": "5577ac845990bdc5067546c82c40a8536fc48d31",
    "author": "fanx0037 <qiao.fan00@gmail.com>",
    "committer": "fanx0037 <qiao.fan00@gmail.com>",
    "message": "Update files to address CRAN comments\n",
    "time": 1734527747
  },
  "_maintainer": {
    "name": "Xiaomin Liu",
    "email": "e0717571@u.nus.edu",
    "login": "e0717571",
    "description": "",
    "uuid": 229097060
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "data.table",
      "role": "Depends"
    },
    {
      "package": "pscl",
      "role": "Depends"
    },
    {
      "package": "CompQuadForm",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Depends"
    },
    {
      "package": "SKAT",
      "role": "Depends"
    },
    {
      "package": "RNOmni",
      "role": "Depends"
    },
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "fanx0037",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "fanx0037",
      "count": 13,
      "uuid": 28041329
    }
  ],
  "_userbio": {
    "uuid": 28041329,
    "type": "user",
    "name": "fanx0037",
    "followers": 0
  },
  "_downloads": {
    "count": 203,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ZIM4rv"
  },
  "_devurl": "https://github.com/fanx0037/zim4rv",
  "_searchresults": 2,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/ZIM4rv.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/fanx0037/zim4rv",
  "_realowner": "fanx0037",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.1",
      "date": "2024-12-19"
    }
  ],
  "_exports": [
    "cauchyp",
    "p_burden_single",
    "p_kernel_single",
    "phi_lambda_hat",
    "phi_mu_hat4zinb",
    "preprocess_genedata",
    "preprocess_phenodata",
    "U_fi_lmd",
    "U_phi_mu4zinb",
    "vuong_test",
    "zimfrv"
  ],
  "_datasets": [
    {
      "name": "Ex1_genedata",
      "title": "An example dataset of genedata",
      "object": "Ex1_genedata",
      "class": [
        "data.frame"
      ],
      "fields": [
        "FID",
        "IID",
        "rs1._T",
        "rs2._G",
        "rs3._A"
      ],
      "rows": 200,
      "table": true,
      "tojson": true
    },
    {
      "name": "Ex1_phenodata",
      "title": "An example dataset of phenodata",
      "object": "Ex1_phenodata",
      "class": [
        "data.frame"
      ],
      "fields": [
        "FID",
        "IID",
        "count",
        "educ",
        "sex",
        "PC1",
        "PC2",
        "PC3"
      ],
      "rows": 200,
      "table": true,
      "tojson": true
    },
    {
      "name": "Ex2_covar",
      "title": "An example dataset of covariate file",
      "object": "Ex2_covar",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3",
        "V4"
      ],
      "rows": 15,
      "table": true,
      "tojson": true
    },
    {
      "name": "Ex2_dosage",
      "title": "An example dataset of dosage file",
      "object": "Ex2_dosage",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3",
        "V4",
        "V5",
        "V6",
        "V7",
        "V8",
        "V9",
        "V10",
        "V11",
        "V12",
        "V13",
        "V14",
        "V15",
        "V16",
        "V17",
        "V18",
        "V19",
        "V20",
        "V21"
      ],
      "rows": 7,
      "table": true,
      "tojson": true
    },
    {
      "name": "Ex2_fam",
      "title": "An example dataset of .fam file",
      "object": "Ex2_fam",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3",
        "V4",
        "V5",
        "V6"
      ],
      "rows": 15,
      "table": true,
      "tojson": true
    },
    {
      "name": "Ex2_pheno",
      "title": "An example dataset of pheno file",
      "object": "Ex2_pheno",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3",
        "V4"
      ],
      "rows": 15,
      "table": true,
      "tojson": true
    },
    {
      "name": "Ex2_region",
      "title": "An example dataset of genetic region file",
      "object": "Ex2_region",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V2",
        "V3",
        "V4",
        "V1"
      ],
      "rows": 3,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "cauchyp",
      "title": "cauchyp",
      "topics": [
        "cauchyp"
      ]
    },
    {
      "page": "Ex1_genedata",
      "title": "An example dataset of genedata",
      "topics": [
        "Ex1_genedata"
      ]
    },
    {
      "page": "Ex1_phenodata",
      "title": "An example dataset of phenodata",
      "topics": [
        "Ex1_phenodata"
      ]
    },
    {
      "page": "Ex2_covar",
      "title": "An example dataset of covariate file",
      "topics": [
        "Ex2_covar"
      ]
    },
    {
      "page": "Ex2_dosage",
      "title": "An example dataset of dosage file",
      "topics": [
        "Ex2_dosage"
      ]
    },
    {
      "page": "Ex2_fam",
      "title": "An example dataset of .fam file",
      "topics": [
        "Ex2_fam"
      ]
    },
    {
      "page": "Ex2_pheno",
      "title": "An example dataset of pheno file",
      "topics": [
        "Ex2_pheno"
      ]
    },
    {
      "page": "Ex2_region",
      "title": "An example dataset of genetic region file",
      "topics": [
        "Ex2_region"
      ]
    },
    {
      "page": "p_burden_single",
      "title": "p_burden_single",
      "topics": [
        "p_burden_single"
      ]
    },
    {
      "page": "p_kernel_single",
      "title": "p_kernel_single",
      "topics": [
        "p_kernel_single"
      ]
    },
    {
      "page": "phi_lambda_hat",
      "title": "phi_lambda_hat",
      "topics": [
        "phi_lambda_hat"
      ]
    },
    {
      "page": "phi_mu_hat4zinb",
      "title": "phi_mu_hat4zinb",
      "topics": [
        "phi_mu_hat4zinb"
      ]
    },
    {
      "page": "preprocess_genedata",
      "title": "preprocess_genedata",
      "topics": [
        "preprocess_genedata"
      ]
    },
    {
      "page": "preprocess_phenodata",
      "title": "preprocess_phenodata",
      "topics": [
        "preprocess_phenodata"
      ]
    },
    {
      "page": "U_fi_lmd",
      "title": "U_fi_lmd",
      "topics": [
        "U_fi_lmd"
      ]
    },
    {
      "page": "U_phi_mu4zinb",
      "title": "U_phi_mu4zinb",
      "topics": [
        "U_phi_mu4zinb"
      ]
    },
    {
      "page": "vuong_test",
      "title": "vuong_test",
      "topics": [
        "vuong_test"
      ]
    },
    {
      "page": "zimfrv",
      "title": "zimfrv",
      "topics": [
        "zimfrv"
      ]
    }
  ],
  "_readme": "https://github.com/fanx0037/zim4rv/raw/HEAD/README.md",
  "_rundeps": [
    "CompQuadForm",
    "data.table",
    "lattice",
    "MASS",
    "Matrix",
    "plyr",
    "pscl",
    "Rcpp",
    "RcppArmadillo",
    "RcppEigen",
    "RNOmni",
    "RSpectra",
    "SKAT",
    "SPAtest"
  ],
  "_score": 2.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "zim4rv",
  "_universes": [
    "fanx0037",
    "e0717571"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-07-15T07:12:33.000Z",
      "distro": "resolute",
      "commit": "5577ac845990bdc5067546c82c40a8536fc48d31",
      "fileid": "https://r2.ropensci.org/abf0106f293457a79cdf22a396b276f1a509dad1d7cdc1eaef5715b9979aea0f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/fanx0037/actions/runs/29396281846"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-07-15T07:12:40.000Z",
      "distro": "resolute",
      "commit": "5577ac845990bdc5067546c82c40a8536fc48d31",
      "fileid": "https://r2.ropensci.org/2973931579b036f9bcd03835c12818a011ab2828d82ee6505b0c543f00c50278",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/fanx0037/actions/runs/29396281846"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-07-15T07:12:15.000Z",
      "commit": "5577ac845990bdc5067546c82c40a8536fc48d31",
      "fileid": "https://r2.ropensci.org/beb02f052a15a7b4bde619efd60a103a75d5fd5f4b346a637b87a28b956c1802",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/fanx0037/actions/runs/29396281846"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-07-15T07:11:26.000Z",
      "commit": "5577ac845990bdc5067546c82c40a8536fc48d31",
      "fileid": "https://r2.ropensci.org/5904e211fd66050b7ce958383c01bee1540c63b4d2b30a16832e68253118af90",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/fanx0037/actions/runs/29396281846"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.1",
      "date": "2026-07-15T07:11:43.000Z",
      "commit": "5577ac845990bdc5067546c82c40a8536fc48d31",
      "fileid": "https://r2.ropensci.org/6f2c528250399a7e2ff73f1645d665e0fadde83bdaed3beadaa8b26b284d5217",
      "status": "success",
      "buildurl": "https://github.com/r-universe/fanx0037/actions/runs/29396281846"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-07-15T07:11:09.000Z",
      "commit": "5577ac845990bdc5067546c82c40a8536fc48d31",
      "fileid": "https://r2.ropensci.org/5e8c5a64692556cd7aa505cff139dc58a739fa4f823792fd78637ff702cb8a9c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/fanx0037/actions/runs/29396281846"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-07-15T07:11:07.000Z",
      "commit": "5577ac845990bdc5067546c82c40a8536fc48d31",
      "fileid": "https://r2.ropensci.org/f9959127a7fcef56f85a011cf135899fc72fc69f6d64249bc988f1733194ee40",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/fanx0037/actions/runs/29396281846"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-07-15T07:11:21.000Z",
      "commit": "5577ac845990bdc5067546c82c40a8536fc48d31",
      "fileid": "https://r2.ropensci.org/4d6b9995d7aad2b30127cb5e82b26583bab868596b4c7a27a137a11a132b31bc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/fanx0037/actions/runs/29396281846"
    }
  ]
}