{ "_id": "6a1f238bb401979e73420b73", "Package": "ZIM4rv", "Type": "Package", "Title": "Gene‐based Association Tests of Zero‐inflated Count Phenotype\nfor Rare Variants", "Version": "0.1.1", "Authors@R": "person(given = \"Xiaomin\",\nfamily = \"Liu\",\nrole = c(\"aut\", \"cre\",\"cph\"),\nemail = \"e0717571@u.nus.edu\")", "Maintainer": "Xiaomin Liu ", "Description": "Gene‐based association tests to model count data with\nexcessive zeros and rare variants using zero-inflated\nPoisson/zero-inflated negative Binomial regression framework.\nThis method was originally described by Fan, Sun, and Li in\nGenetic Epidemiology 46(1):73-86 .", "License": "GPL-3", "URL": "https://github.com/fanx0037/ZIM4rv", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.3.2", "BugReports": "https://github.com/fanx0037/ZIM4rv/issues", "Repository": "https://fanx0037.r-universe.dev", "Date/Publication": "2024-12-18 13:15:47 UTC", "RemoteUrl": "https://github.com/fanx0037/zim4rv", "RemoteRef": "HEAD", "RemoteSha": "5577ac845990bdc5067546c82c40a8536fc48d31", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-16 06:49:11 UTC", "User": "root" }, "Author": "Xiaomin Liu [aut, cre, cph]", "MD5sum": "c4ea4f4482ff27775081b2b8f88079da", "_user": "fanx0037", "_type": "src", "_file": "ZIM4rv_0.1.1.tar.gz", "_fileid": "a0b5c9da1ef8f01254f1acbddc38e41d73f321df5becda4ca2d84373f2fd134a", "_filesize": 351619, "_sha256": "a0b5c9da1ef8f01254f1acbddc38e41d73f321df5becda4ca2d84373f2fd134a", "_created": "2026-05-16T06:49:11.000Z", "_published": "2026-06-02T18:40:11.379Z", "_distro": "noble", "_jobs": [ { "job": 79145648532, "time": 123, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7031339169" }, { "job": 79145648899, "time": 123, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7031339181" }, { "job": 79145648884, "time": 169, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7031347598" }, { "job": 79145649082, "time": 129, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7031338708" }, { "job": 79145648181, "time": 169, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7031322505" }, { "job": 79145648238, "time": 85, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7366713516" }, { "job": 79145648833, "time": 83, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7031334084" }, { "job": 79145649561, "time": 84, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7031334100" }, { "job": 79145649381, "time": 95, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7031335637" } ], "_buildurl": "https://github.com/r-universe/fanx0037/actions/runs/25955348621", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/fanx0037/zim4rv", "_commit": { "id": "5577ac845990bdc5067546c82c40a8536fc48d31", "author": "fanx0037 ", "committer": "fanx0037 ", "message": "Update files to address CRAN comments\n", "time": 1734527747 }, "_maintainer": { "name": "Xiaomin Liu", "email": "e0717571@u.nus.edu", "login": "e0717571", "uuid": 229097060 }, "_registered": true, "_dependencies": [ { "package": "data.table", "role": "Depends" }, { "package": "pscl", "role": "Depends" }, { "package": "CompQuadForm", "role": "Depends" }, { "package": "stats", "role": "Depends" }, { "package": "SKAT", "role": "Depends" }, { "package": "RNOmni", "role": "Depends" }, { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "fanx0037", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "fanx0037", "count": 13, "uuid": 28041329 } ], "_userbio": { "uuid": 28041329, "type": "user", "name": "fanx0037" }, "_downloads": { "count": 179, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ZIM4rv" }, "_devurl": "https://github.com/fanx0037/zim4rv", "_searchresults": 2, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/ZIM4rv.html", "manual.pdf" ], "_homeurl": "https://github.com/fanx0037/zim4rv", "_realowner": "fanx0037", "_cranurl": true, "_releases": [ { "version": "0.1.1", "date": "2024-12-19" } ], "_exports": [ "cauchyp", "p_burden_single", "p_kernel_single", "phi_lambda_hat", "phi_mu_hat4zinb", "preprocess_genedata", "preprocess_phenodata", "U_fi_lmd", "U_phi_mu4zinb", "vuong_test", "zimfrv" ], "_datasets": [ { "name": "Ex1_genedata", "title": "An example dataset of genedata", "object": "Ex1_genedata", "class": [ "data.frame" ], "fields": [ "FID", "IID", "rs1._T", "rs2._G", "rs3._A" ], "rows": 200, "table": true, "tojson": true }, { "name": "Ex1_phenodata", "title": "An example dataset of phenodata", "object": "Ex1_phenodata", "class": [ "data.frame" ], "fields": [ "FID", "IID", "count", "educ", "sex", "PC1", "PC2", "PC3" ], "rows": 200, "table": true, "tojson": true }, { "name": "Ex2_covar", "title": "An example dataset of covariate file", "object": "Ex2_covar", "class": [ "data.frame" ], "fields": [ "V1", "V2", "V3", "V4" ], "rows": 15, "table": true, "tojson": true }, { "name": "Ex2_dosage", "title": "An example dataset of dosage file", "object": "Ex2_dosage", "class": [ "data.frame" ], "fields": [ "V1", "V2", "V3", "V4", "V5", "V6", "V7", "V8", "V9", "V10", "V11", "V12", "V13", "V14", "V15", "V16", "V17", "V18", "V19", "V20", "V21" ], "rows": 7, "table": true, "tojson": true }, { "name": "Ex2_fam", "title": "An example dataset of .fam file", "object": "Ex2_fam", "class": [ "data.frame" ], "fields": [ "V1", "V2", "V3", "V4", "V5", "V6" ], "rows": 15, "table": true, "tojson": true }, { "name": "Ex2_pheno", "title": "An example dataset of pheno file", "object": "Ex2_pheno", "class": [ "data.frame" ], "fields": [ "V1", "V2", "V3", "V4" ], "rows": 15, "table": true, "tojson": true }, { "name": "Ex2_region", "title": "An example dataset of genetic region file", "object": "Ex2_region", "class": [ "data.frame" ], "fields": [ "V2", "V3", "V4", "V1" ], "rows": 3, "table": true, "tojson": true } ], "_help": [ { "page": "cauchyp", "title": "cauchyp", "topics": [ "cauchyp" ] }, { "page": "Ex1_genedata", "title": "An example dataset of genedata", "topics": [ "Ex1_genedata" ] }, { "page": "Ex1_phenodata", "title": "An example dataset of phenodata", "topics": [ "Ex1_phenodata" ] }, { "page": "Ex2_covar", "title": "An example dataset of covariate file", "topics": [ "Ex2_covar" ] }, { "page": "Ex2_dosage", "title": "An example dataset of dosage file", "topics": [ "Ex2_dosage" ] }, { "page": "Ex2_fam", "title": "An example dataset of .fam file", "topics": [ "Ex2_fam" ] }, { "page": "Ex2_pheno", "title": "An example dataset of pheno file", "topics": [ "Ex2_pheno" ] }, { "page": "Ex2_region", "title": "An example dataset of genetic region file", "topics": [ "Ex2_region" ] }, { "page": "p_burden_single", "title": "p_burden_single", "topics": [ "p_burden_single" ] }, { "page": "p_kernel_single", "title": "p_kernel_single", "topics": [ "p_kernel_single" ] }, { "page": "phi_lambda_hat", "title": "phi_lambda_hat", "topics": [ "phi_lambda_hat" ] }, { "page": "phi_mu_hat4zinb", "title": "phi_mu_hat4zinb", "topics": [ "phi_mu_hat4zinb" ] }, { "page": "preprocess_genedata", "title": "preprocess_genedata", "topics": [ "preprocess_genedata" ] }, { "page": "preprocess_phenodata", "title": "preprocess_phenodata", "topics": [ "preprocess_phenodata" ] }, { "page": "U_fi_lmd", "title": "U_fi_lmd", "topics": [ "U_fi_lmd" ] }, { "page": "U_phi_mu4zinb", "title": "U_phi_mu4zinb", "topics": [ "U_phi_mu4zinb" ] }, { "page": "vuong_test", "title": "vuong_test", "topics": [ "vuong_test" ] }, { "page": "zimfrv", "title": "zimfrv", "topics": [ "zimfrv" ] } ], "_readme": "https://github.com/fanx0037/zim4rv/raw/HEAD/README.md", "_rundeps": [ "CompQuadForm", "data.table", "lattice", "MASS", "Matrix", "plyr", "pscl", "Rcpp", "RcppArmadillo", "RcppEigen", "RNOmni", "RSpectra", "SKAT", "SPAtest" ], "_score": 2.6989700043360187, "_indexed": true, "_nocasepkg": "zim4rv", "_universes": [ "fanx0037", "e0717571" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.1", "date": "2026-05-16T06:51:08.000Z", "distro": "noble", "commit": "5577ac845990bdc5067546c82c40a8536fc48d31", "fileid": "1282b476edecdddf1d2f66effc785070b747113f3568a7d6954e71f9e8351fc0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/fanx0037/actions/runs/25955348621" }, { "r": "4.6.0", "os": "linux", "version": "0.1.1", "date": "2026-05-16T06:51:08.000Z", "distro": "noble", "commit": "5577ac845990bdc5067546c82c40a8536fc48d31", "fileid": "2cea5b9576815b0f4a8306f6e633e6711af70a5382f2f833075cff92fb5ef83b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/fanx0037/actions/runs/25955348621" }, { "r": "4.5.3", "os": "mac", "version": "0.1.1", "date": "2026-05-16T06:52:21.000Z", "commit": "5577ac845990bdc5067546c82c40a8536fc48d31", "fileid": "dd3220d0200d76367ad5812e2d7eaac7af79ee00a35aef555fdc107f2a98e8ea", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/fanx0037/actions/runs/25955348621" }, { "r": "4.6.0", "os": "mac", "version": "0.1.1", "date": "2026-05-16T06:51:14.000Z", "commit": "5577ac845990bdc5067546c82c40a8536fc48d31", "fileid": "dd351d8ae8f9a60a183b74e6a9492cdf63af0d977f8d201498dbf68047e9f691", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/fanx0037/actions/runs/25955348621" }, { "r": "4.7.0", "os": "win", "version": "0.1.1", "date": "2026-05-16T06:50:25.000Z", "commit": "5577ac845990bdc5067546c82c40a8536fc48d31", "fileid": "6711a1c5892c59e8ed0515db900ae108b9460be516301a6ab9c6828bbc3530d8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/fanx0037/actions/runs/25955348621" }, { "r": "4.5.3", "os": "win", "version": "0.1.1", "date": "2026-05-16T06:50:25.000Z", "commit": "5577ac845990bdc5067546c82c40a8536fc48d31", "fileid": "0837bd230fa42fe24930c457c212829f77d376c211eab80aeec5aeecbca11662", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/fanx0037/actions/runs/25955348621" }, { "r": "4.6.0", "os": "win", "version": "0.1.1", "date": "2026-05-16T06:50:34.000Z", "commit": "5577ac845990bdc5067546c82c40a8536fc48d31", "fileid": "7e8158517d8064b3fa3daf44f80b7e2720e94d6656b7345bbce56449ee12b478", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/fanx0037/actions/runs/25955348621" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.1", "date": "2026-06-02T18:39:50.000Z", "commit": "5577ac845990bdc5067546c82c40a8536fc48d31", "fileid": "0644a64c4074681be34eaa8e24b2d85958e0dbb925419f86bf3d48ba307db432", "status": "success", "buildurl": "https://github.com/r-universe/fanx0037/actions/runs/25955348621" } ] }